coby

Clone the project :

• Make sure using the option "--recursive" when cloning the project, this allows include the submodules

  git clone --recursive https://forgemia.inra.fr/anaee-dev/coby.git .

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1. Coby standard_build ( 4 Options )

if you want to :

1.1 Consult help Install :

./01_coby_standard_builder.sh help

1.2 Generate the Only Coby Package ( without downloading and compiling the java projects )

./01_coby_standard_builder.sh

• to install libs, just run the command :

./coby_standard_bin/pipeline/scripts/00_install_libs.sh

1.3 install only coby

./01_coby_standard_builder.sh -i coby

1.4 install only jaxy ( secured service web )

./01_coby_standard_builder.sh -i jaxy

1.5 install both coby & jaxy

./01_coby_standard_builder.sh -i coby jaxy

Coby standard_build Example :

• Make sure Copy "SI" + "orchestrators" to the coby_standard_bin directory ( created by the previous script )

  cp -r src/SI/ coby_standard_bin/pipeline/

  cp -r src/orchestrators/ coby_standard_bin/pipeline/

  ./coby_standard_bin/pipeline/orchestrators/synthesis_extractor_entry.sh

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2. Coby docker_build :

./02_coby_docker_builder.sh

Example : Run coby_docker using orcherstrators ( located in src ) + SI modelization ( locate in src ) :

./docker_runner.sh

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3. Example of how calling scripts that are provided by coby Using Coby standard_build :

- 06_gen_mapping.sh

• Without CSV

  ./coby_standard_bin/pipeline/scripts/06_gen_mapping.sh input=$(pwd)/Demo/Demo_1/ output=$(pwd)/Demo/Demo_1/mapping.obda

• USING CSV

  ./coby_standard_bin/pipeline/scripts/06_gen_mapping.sh input=$(pwd)/Demo/Demo_2/physicochimie/ output=$(pwd)/Demo/Demo_2/mapping.obda class="physico chimie" column="12" csvFile="$(pwd)/Demo/Demo_2/csv/semantic_si.csv"